Tutorials

• Element MoSeq includes an interactive tutorial on GitHub Codespaces, which is configured for users to run the pipeline.

• DataJoint Elements are modular and can be connected into a complete pipeline. In the interactive tutorial is a example Jupyter notebook that combine five DataJoint Elements - Lab, Animal, Session, Event, and MoSeq. The notebook describes the pipeline and provides instructions for running the pipeline. For convenience, this notebook is also rendered on this website:
  • Tutorial notebook

Installation Instructions for Active Projects

• The Element MoSeq described above can be modified for a user's specific experimental requirements and thereby used in active projects.

• The GitHub Codespace and Dev Container is configured for tutorials and prototyping.
  We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the User Guide page.

Pose Estimation Method

• At present, behavioral segmentation analysis is compatible with keypoint data extracted with DeepLabCut with single-animal datasets.