DataJoint Elements

Build and tune your pipeline quickly by leveraging DataJoint Elements. They give you a huge head start – validated components that can be mixed and matched into complex pipelines, with inherent automation, quality control, and data compression that just work.

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Behavioral
General
Neuroscience

Element Event

A data pipeline for event- and trial-based experiments.

Neuroscience
Behavioral

Element Interface

Common functions for the DataJoint Elements.

General

Element Session

A data pipeline for session management.

General

Element Visual Stimulus

A data pipeline for visual stimulation with Psychtoolbox.

Neuroscience

Element Animal

A data pipeline for subject management.

General

Element Optogenetics

A data pipeline for managing data from optogenetics experiments.

Neuroscience

Element Lab

A data pipeline for lab management.

General

Element MoSeq

A data pipeline for motion sequencing with Keypoint-MoSeq.

Neuroscience
Behavioral

Element Facemap

A data pipeline for pose estimation with Facemap.

Neuroscience
Behavioral

Element DeepLabCut

A data pipeline for pose estimation with DeepLabCut.

Neuroscience
Behavioral

Element Array Electrophysiology

A data pipeline for Neuropixels probes.

Neuroscience

Element Miniscope

A data pipeline for miniscope calcium imaging.

Neuroscience

Element Electrode Localization

A data pipeline for electrode localization of Neuropixels probes.

Neuroscience

Element ZStack

A data pipeline for segmenting volumetric microscopy data with Cellpose, uploading to BossDB, and visualizing with Neuroglancer.

Neuroscience

Element Calcium Imaging

A data pipeline for calcium imaging microscopy.

Neuroscience

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Comprehensive Neuroscience Capabilities

Build and tune your pipeline quickly by leveraging DataJoint Elements, a collection of reference implementations of components for key neuroscience methodologies. These aren't just theoretical constructs – they’re curated from practices in leading neuroscience labs, and integrate the most powerful analysis tools in neuroscience. They give you a huge head start – validated components that can be mixed and matched into complex pipelines, with inherent automation, quality control, and data compression that just work.

See a Comprehensive List

Element Event

A data pipeline for event- and trial-based experiments.

Element Interface

Common functions for the DataJoint Elements.

Element Session

A data pipeline for session management.

Element Visual Stimulus

A data pipeline for visual stimulation with Psychtoolbox.

Element Animal

A data pipeline for subject management.

Element Optogenetics

A data pipeline for managing data from optogenetics experiments.

Element Lab

A data pipeline for lab management.

Element MoSeq

A data pipeline for motion sequencing with Keypoint-MoSeq.

Element Facemap

A data pipeline for pose estimation with Facemap.

Element DeepLabCut

A data pipeline for pose estimation with DeepLabCut.

Element Array Electrophysiology

A data pipeline for Neuropixels probes.

Element Miniscope

A data pipeline for miniscope calcium imaging.

Element Electrode Localization

A data pipeline for electrode localization of Neuropixels probes.

Element ZStack

A data pipeline for segmenting volumetric microscopy data with Cellpose, uploading to BossDB, and visualizing with Neuroglancer.

Element Calcium Imaging

A data pipeline for calcium imaging microscopy.